Publications

A list of my publications is also available in my CV as well as in my Google Scholar profile

2017

  • Zhaoming Wang, Carmen L. Wilson, John Easton, Dale Hedges, Qi Liu, Gang Wu, Michael Rusch, Michael Edmonson, Shawn Levy, Jennifer Q. Lanctot, Eric Caron, Kyla Shelton, Kelsey Currie, Matthew Lear, Heather L. Mulder, Donald Yergeau, Celeste Rosencrance, Bhavin Vadodaria, Yadav Sapkota, Russell J. Brooke, Wonjong Moon, Evadnie Rampersaud, Xiaotu Ma, Shuoguo Wang, Ti-Cheng Chang, Stephen Rice, Andrew Thrasher, Aman Patel, Cynthia Pepper, Xin Zhou, Xiang Chen, Wenan Chen, Angela Jones, Braden Boone, Deo Kumar Srivastava, Chimene A. Kesserwan, Kim E. Nichols, James R. Downing, Melissa M. Hudson, Yutaka Yasui, Leslie L. Robison and Jinghui Zhang, Germline mutations in cancer predisposition genes and risk for subsequent neoplasms among long-term survivors of childhood cancer in the St. Jude Lifetime Cohort, AACR Annual Meeting, 2017.

2016

  • Andrew Thrasher, Zhaoming Wang, Heather Mulder, Dale Hedges, Ti-Cheng Chang, Celeste Rosencrance, John Easton, Leslie Robison, and Jinghui Zhang, Saliva is a good alternative DNA source for whole genome and/or whole exome sequencing, American Society of Human Genetics, 2016.
  • Elizabeth M Azzato, Michael Rusch, Sheila Shurtleff, Joy Nakitandwe, Zhaojie Zhang, Dale Hedges, Scott Newman, Michael Edmonson, Andrew Thrasher, Jared Becksfort, Chimene Kesserwan, Susana Raimondi, Kim E Nichols, David W Ellison, Jinghui Zhang, and James Downing, Clinical Utilization of Whole-Genome, Whole-Exome and Transcriptome Sequencing Integrative Analysis for Pediatric Oncology Molecular Diagnostics, Journal Of Molecular Diagnostics, Volume 18, Issue 6, 2016.
  • Zhaoming Wang, Yutaka Yasui, Kirsten K. Ness, Carmen L. Wilson, Deo Kumar Srivastava, Michael Rusch, Andrew Thrasher, Melissa M. Hudson, Jinghui Zhang, and Leslie L. Robison, Telomere Length and Accelerated Aging in Adult Survivors of Childhood Cancer: a report from the St. Jude Lifetime Cohort, International Congress Of Human Genetics (ICHG), 2016.

2014

  • Andrew Thrasher, Zachary Musgrave, Brian Kachmarck, Douglas Thain and Scott Emrich, Scaling Up Genome Annotation Using MAKER and Work Queue, Int. J. of Bioinformatics Research and Applications (ICCABS 2012 Special Issue), Volume 10, Issue 4-5, 2014.

2013

  • Dinesh Rajan, Andrew Thrasher, Badi' Abdul-Wahid, Jesus A Izaguirre, Scott Emrich and Douglas Thain. Cases Studies in Designing Elastic Applications. 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid).

2012

  • Andrew Thrasher, Zachary Musgrave, Brian Kachmarck, Douglas Thain and Scott Emrich. Scaling Up Genome Annotation Using MAKER and Work Queue. BMC Genomics. In Press.
  • Christopher Moretti, Andrew Thrasher, Li Yu, Michael Olson, Scott Emrich, Douglas Thain. A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids. IEEE Transactions on Parallel and Distributed Systems. 23. 12. 2189-2197.
  • Andrew Thrasher, Zachary Musgrave, Douglas Thain, Scott Emrich. Shifting the Bioinformatics Computing Paradigm: A Case Study in Parallelizing Genome Annotation Using MAKER and Work Queue. International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

2011

  • Peter Bui, Li Yu, Andrew Thrasher, Rory Carmichael, Irena Lanc, Patrick Donnelly, Douglas Thain. Scripting distributed scientific workflows using Weaver Concurrency and Computation: Practice and Experience. 24. 15. 1685-1707.
  • Karine Megy, Scott J Emrich, Daniel Lawson, David Campbell, Emmanuel Dialynas, Daniel ST Hughes, Gautier Koscielny, Christos Louis, Robert M MacCallum, Seth N Redmond, Andrew Sheehan, Pantelis Topalis, Derek Wilson, the VectorBase Consortium. VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Research

2010

  • Andrew Thrasher, Rory Carmichael, Peter Bui, Li Yu, Douglas Thain, Scott Emrich. Taming complex bioinformatics workflows with Weaver, Makeflow, and Starch Workflows in Support of Large-Scale Science (WORKS), 2010 5th Workshop on
  • Li Yu, Christopher Moretti, Andrew Thrasher, Scott Emrich, Kenneth Judd, Douglas Thain. Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions. Cluster Computing. 13. 3. 243-256