Publications

A list of my publications is also available in my CV as well as in my Google Scholar profile

2013

  • Dinesh Rajan, Andrew Thrasher, Badi' Abdul-Wahid, Jesus A Izaguirre, Scott Emrich and Douglas Thain. Cases Studies in Designing Elastic Applications. 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid).

2012

  • Andrew Thrasher, Zachary Musgrave, Brian Kachmarck, Douglas Thain and Scott Emrich. Scaling Up Genome Annotation Using MAKER and Work Queue. BMC Genomics. In Press.
  • Christopher Moretti, Andrew Thrasher, Li Yu, Michael Olson, Scott Emrich, Douglas Thain. A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids. IEEE Transactions on Parallel and Distributed Systems. 23. 12. 2189-2197.
  • Andrew Thrasher, Zachary Musgrave, Douglas Thain, Scott Emrich. Shifting the Bioinformatics Computing Paradigm: A Case Study in Parallelizing Genome Annotation Using MAKER and Work Queue. International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

2011

  • Peter Bui, Li Yu, Andrew Thrasher, Rory Carmichael, Irena Lanc, Patrick Donnelly, Douglas Thain. Scripting distributed scientific workflows using Weaver Concurrency and Computation: Practice and Experience. 24. 15. 1685-1707.
  • Karine Megy, Scott J Emrich, Daniel Lawson, David Campbell, Emmanuel Dialynas, Daniel ST Hughes, Gautier Koscielny, Christos Louis, Robert M MacCallum, Seth N Redmond, Andrew Sheehan, Pantelis Topalis, Derek Wilson, the VectorBase Consortium. VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Research

2010

  • Andrew Thrasher, Rory Carmichael, Peter Bui, Li Yu, Douglas Thain, Scott Emrich. Taming complex bioinformatics workflows with Weaver, Makeflow, and Starch Workflows in Support of Large-Scale Science (WORKS), 2010 5th Workshop on
  • Li Yu, Christopher Moretti, Andrew Thrasher, Scott Emrich, Kenneth Judd, Douglas Thain. Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions. Cluster Computing. 13. 3. 243-256